{
  "_id": "6ac4d501f511ae58c09a201e",
  "Package": "HLCtools",
  "Title": "Calculate Herd Lying Concordance Metrics",
  "Version": "0.1.0",
  "Authors@R": "person(\ngiven = \"Guilherme\",\nfamily = \"Amorim Franchi\",\nemail = \"gaf@anivet.au.dk\",\nrole = c(\"aut\", \"cre\", \"cph\"),\ncomment = c(ORCID = \"0000-0001-7653-6512\")\n)",
  "Description": "Calculates Herd Lying Concordance (HLC) metrics from\nindividual animal lying-behaviour data. HLC is a continuous\nframework for quantifying group-level behavioural cohesion from\nbetween-animal dispersion within observation intervals. The\npackage implements standard deviation, mean absolute deviation,\ninterquartile range, and entropy formulations, lying-weighted\nextensions, threshold-based synchrony comparisons, temporal\nsummaries, and descriptive method-ranking tools. The HLC\nformulations are introduced in this package; related approaches\nto cattle behavioural synchrony include Raussi et al. (2011)\n<doi:10.1017/S1751731110001928>, Kok et al. (2023)\n<doi:10.1016/j.applanim.2023.105906>, and the activity metric\nframework of van Dixhoorn et al. (2024)\n<doi:10.24072/pcjournal.489>.",
  "License": "MIT + file LICENSE",
  "URL": "https://github.com/guilhermefranchi/HLCtools",
  "BugReports": "https://github.com/guilhermefranchi/HLCtools/issues",
  "Encoding": "UTF-8",
  "Language": "en-US",
  "Roxygen": "list(markdown = TRUE)",
  "RoxygenNote": "7.3.3",
  "VignetteBuilder": "knitr",
  "Config/testthat/edition": "3",
  "LazyData": "true",
  "Repository": "https://guilhermefranchi.r-universe.dev",
  "Date/Publication": "2026-08-06 08:33:53 UTC",
  "RemoteUrl": "https://github.com/guilhermefranchi/hlctools",
  "RemoteRef": "HEAD",
  "RemoteSha": "455fe89f6a55086e1cd0b4ff4be8718b035c5bf9",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-10-06 10:56:35 UTC",
    "User": "root"
  },
  "Author": "Guilherme Amorim Franchi [aut, cre, cph] (ORCID:\n<https://orcid.org/0000-0001-7653-6512>)",
  "Maintainer": "Guilherme Amorim Franchi <gaf@anivet.au.dk>",
  "_user": "guilhermefranchi",
  "_type": "src",
  "_file": "HLCtools_0.1.0.tar.gz",
  "_fileid": "https://r2.ropensci.org/9cceb661e6512494a4860d6511ef90cda04caf3e33aa1b925054c62d6342883f",
  "_filesize": 130062,
  "_sha256": "9cceb661e6512494a4860d6511ef90cda04caf3e33aa1b925054c62d6342883f",
  "_expires": "2027-01-14T11:01:19.000Z",
  "_created": "2026-10-06T10:56:35.000Z",
  "_published": "2026-10-06T11:01:21.503Z",
  "_jobs": [
    {
      "job": 112234243602,
      "time": 97,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "11407356366"
    },
    {
      "job": 112234243669,
      "time": 108,
      "config": "linux-release-x86_64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "11407606205"
    },
    {
      "job": 112234243671,
      "time": 154,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "11408191139"
    },
    {
      "job": 112234243553,
      "time": 156,
      "config": "macos-release-arm64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "11408395886"
    },
    {
      "job": 112233296391,
      "time": 155,
      "config": "source",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "11408355284"
    },
    {
      "job": 112234243516,
      "time": 99,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "11407521365"
    },
    {
      "job": 112234243548,
      "time": 66,
      "config": "windows-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "11407161547"
    },
    {
      "job": 112234243687,
      "time": 82,
      "config": "windows-oldrel-x86_64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "11408471147"
    },
    {
      "job": 112234243580,
      "time": 60,
      "config": "windows-release-x86_64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "11408051035"
    }
  ],
  "_host": "GitHub-Actions",
  "_buildurl": "https://github.com/r-universe/guilhermefranchi/actions/runs/37452820194",
  "_status": "success",
  "_upstream": "https://github.com/guilhermefranchi/hlctools",
  "_commit": {
    "id": "455fe89f6a55086e1cd0b4ff4be8718b035c5bf9",
    "author": "Guilherme A. Franchi <144438938+guilhermefranchi@users.noreply.github.com>",
    "committer": "GitHub <noreply@github.com>",
    "message": "Update README.md",
    "time": 1786005233
  },
  "_maintainer": {
    "name": "Guilherme Amorim Franchi",
    "email": "gaf@anivet.au.dk",
    "login": "guilhermefranchi",
    "linkedin": "in/guilherme-amorim-franchi-045352376",
    "description": "Researcher & Consultant on Validation of Livestock Sensor Data",
    "uuid": 144438938,
    "orcid": "0000-0001-7653-6512"
  },
  "_distro": "resolute",
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 4.1.0",
      "role": "Depends"
    },
    {
      "package": "dplyr",
      "role": "Imports"
    },
    {
      "package": "rlang",
      "role": "Imports"
    },
    {
      "package": "knitr",
      "role": "Suggests"
    },
    {
      "package": "rmarkdown",
      "role": "Suggests"
    },
    {
      "package": "testthat",
      "version": ">= 3.0.0",
      "role": "Suggests"
    }
  ],
  "_owner": "guilhermefranchi",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [
    {
      "week": "2026-27",
      "n": 17
    },
    {
      "week": "2026-29",
      "n": 1
    },
    {
      "week": "2026-30",
      "n": 2
    },
    {
      "week": "2026-32",
      "n": 1
    }
  ],
  "_tags": [
    {
      "name": "v0.1.0",
      "date": "2026-07-03"
    }
  ],
  "_stars": 0,
  "_contributors": [
    {
      "user": "guilhermefranchi",
      "count": 21,
      "uuid": 144438938
    }
  ],
  "_userbio": {
    "uuid": 144438938,
    "type": "user",
    "name": "Guilherme A. Franchi",
    "followers": 0,
    "description": "Researcher & Consultant on Validation of Livestock Sensor Data"
  },
  "_downloads": {
    "count": 223,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/HLCtools"
  },
  "_devurl": "https://github.com/guilhermefranchi/hlctools",
  "_searchresults": 0,
  "_rbuild": "4.6.1",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/HLCtools.html",
    "extra/manual.pdf",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "extra/readme.html",
    "extra/readme.md",
    "LICENSE"
  ],
  "_homeurl": "https://github.com/guilhermefranchi/hlctools",
  "_realowner": "guilhermefranchi",
  "_cranurl": true,
  "_releases": [
    {
      "version": "0.1.0",
      "date": "2026-07-23"
    }
  ],
  "_exports": [
    "calculate_hlc",
    "compare_hlc_methods",
    "hlc_methods",
    "hlc_weighted_methods",
    "rank_hlc_methods",
    "summarise_hlc_daily"
  ],
  "_datasets": [
    {
      "name": "example_lies",
      "title": "Example lying behaviour dataset",
      "object": "example_lies",
      "class": [
        "data.frame"
      ],
      "fields": [
        "group",
        "day",
        "week",
        "time",
        "cow",
        "lying"
      ],
      "rows": 40,
      "table": true,
      "tojson": true
    }
  ],
  "_help": [
    {
      "page": "calculate_hlc",
      "title": "Calculate interval-level Herd Lying Concordance",
      "topics": [
        "calculate_hlc"
      ]
    },
    {
      "page": "compare_hlc_methods",
      "title": "Compare HLC methods",
      "topics": [
        "compare_hlc_methods"
      ]
    },
    {
      "page": "example_lies",
      "title": "Example lying behaviour dataset",
      "topics": [
        "example_lies"
      ]
    },
    {
      "page": "hlc_methods",
      "title": "List available unweighted HLC methods",
      "topics": [
        "hlc_methods"
      ]
    },
    {
      "page": "hlc_weighted_methods",
      "title": "List available lying-weighted HLC methods",
      "topics": [
        "hlc_weighted_methods"
      ]
    },
    {
      "page": "rank_hlc_methods",
      "title": "Rank HLC methods for a dataset",
      "topics": [
        "rank_hlc_methods"
      ]
    },
    {
      "page": "summarise_hlc_daily",
      "title": "Summarise HLC metrics by day",
      "topics": [
        "summarise_hlc_daily"
      ]
    }
  ],
  "_readme": "https://github.com/guilhermefranchi/hlctools/raw/HEAD/README.md",
  "_rundeps": [
    "cli",
    "dplyr",
    "generics",
    "glue",
    "lifecycle",
    "magrittr",
    "pillar",
    "pkgconfig",
    "R6",
    "rlang",
    "tibble",
    "tidyselect",
    "utf8",
    "vctrs",
    "withr"
  ],
  "_vignettes": [
    {
      "source": "getting-started.Rmd",
      "filename": "getting-started.html",
      "title": "Getting started with HLCtools",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Overview",
        "Load package and example data",
        "Required data format",
        "Calculate interval-level HLC",
        "Summarise HLC by day",
        "Rank HLC methods for a dataset",
        "Interpretation",
        "Using HLC and lying-weighted HLC together",
        "Available HLC methods",
        "Notes on method choice",
        "Citation"
      ],
      "created": "2026-07-01 10:27:25",
      "modified": "2026-07-03 15:26:50",
      "commits": 3
    }
  ],
  "_score": 4.301029995663981,
  "_indexed": true,
  "_nocasepkg": "hlctools",
  "_universes": [
    "guilhermefranchi"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "0.1.0",
      "date": "2026-10-06T10:58:16.000Z",
      "distro": "resolute",
      "commit": "455fe89f6a55086e1cd0b4ff4be8718b035c5bf9",
      "fileid": "https://r2.ropensci.org/7e31cecefae818e48b02b158cdd2f20b8f9c73bf0bab1c70a62d652f752dfc50",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/guilhermefranchi/actions/runs/37452820194"
    },
    {
      "r": "4.6.1",
      "os": "linux",
      "version": "0.1.0",
      "date": "2026-10-06T10:58:30.000Z",
      "distro": "resolute",
      "commit": "455fe89f6a55086e1cd0b4ff4be8718b035c5bf9",
      "fileid": "https://r2.ropensci.org/46088c712c6f294c5eed3b8173035b171ccbcfc3e1879c6e71d2ce916716a2f8",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/guilhermefranchi/actions/runs/37452820194"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "0.1.0",
      "date": "2026-10-06T10:59:08.000Z",
      "commit": "455fe89f6a55086e1cd0b4ff4be8718b035c5bf9",
      "fileid": "https://r2.ropensci.org/061f62a0238ce3b20d229bd609bfa90424b782d6add32025d93a2251447b54eb",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/guilhermefranchi/actions/runs/37452820194"
    },
    {
      "r": "4.6.1",
      "os": "mac",
      "version": "0.1.0",
      "date": "2026-10-06T11:00:13.000Z",
      "commit": "455fe89f6a55086e1cd0b4ff4be8718b035c5bf9",
      "fileid": "https://r2.ropensci.org/c971c9a43d30784c254c31cce9778cd7fb72b1b4319d747a0b958c69f4fdcc47",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/guilhermefranchi/actions/runs/37452820194"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "0.1.0",
      "date": "2026-10-06T10:58:31.000Z",
      "commit": "455fe89f6a55086e1cd0b4ff4be8718b035c5bf9",
      "fileid": "https://r2.ropensci.org/07c1962484ce9531b8ec55e01a77c4588c0c7d1d0019ce442c89f9327954e441",
      "status": "success",
      "buildurl": "https://github.com/r-universe/guilhermefranchi/actions/runs/37452820194"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "0.1.0",
      "date": "2026-10-06T10:57:40.000Z",
      "commit": "455fe89f6a55086e1cd0b4ff4be8718b035c5bf9",
      "fileid": "https://r2.ropensci.org/7819ad3acd03ebad250dc0524ac3d95f4001bc5b330f703f805f0e2774f85600",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/guilhermefranchi/actions/runs/37452820194"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "0.1.0",
      "date": "2026-10-06T10:57:56.000Z",
      "commit": "455fe89f6a55086e1cd0b4ff4be8718b035c5bf9",
      "fileid": "https://r2.ropensci.org/dc518cc6b51c39f7a35b0d97d0bd5b03ac1b8dddf324edd7a518d34777085a1f",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/guilhermefranchi/actions/runs/37452820194"
    },
    {
      "r": "4.6.1",
      "os": "win",
      "version": "0.1.0",
      "date": "2026-10-06T10:57:36.000Z",
      "commit": "455fe89f6a55086e1cd0b4ff4be8718b035c5bf9",
      "fileid": "https://r2.ropensci.org/4749b068fcd3560970dedc018117a10b736e153073a5efcf4755bd8289307a93",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/guilhermefranchi/actions/runs/37452820194"
    }
  ]
}